SNP Profiles matching JA6/2 [POU]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	CT	CT	CC	CT	GT	CT	CC	AT	AA	CC	AA
1._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
2._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
3._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
4._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
5._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
6._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
7._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
8._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
9._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
10._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
11._GC-08-091-2-14	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
12._GC-08-091-2-14	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA
13._JA_6_/2_[POU]	CC	GG	CC	CT	CT	AC	CT	GT	CT	CC	_	AA	CC	AA
14._JA_6_/2_[POU]	CC	GG	CC	CT	CT	_	CT	GT	CT	CC	TT	AA	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CT	CT	GG	GG	AG	CT	CC	CC	GG	CC	AA
1._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
2._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
3._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
4._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
5._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
6._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
7._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
8._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
9._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
10._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
11._GC-08-091-2-14	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
12._GC-08-091-2-14	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA
13._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	_	AA	CT	CC	CC	GG	CC	AA
14._JA_6_/2_[POU]	TT	AT	GG	CT	CT	GG	GG	AA	CT	CC	CC	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
1._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
2._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
3._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
4._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
5._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
6._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
7._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
8._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
9._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
10._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
11._GC-08-091-2-14	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
12._GC-08-091-2-14	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
13._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	CT	GT	CC	AT	CG	X_X	X_X
14._JA_6_/2_[POU]	AG	AG	AT	CC	AA	CC	AC	_	GT	CC	AT	CG	X_X	X_X

Input profile: JA_6_/2_[POU]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 364

Dapeng Zhang, 2016

1._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 3 > FP

Dapeng Zhang, 2016

2._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 2 > FP

Dapeng Zhang, 2016

3._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 1 > FP

Dapeng Zhang, 2016

4._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 13

Dapeng Zhang, 2016

5._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 11

Dapeng Zhang, 2016

6._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 9

Dapeng Zhang, 2016

7._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 7

Dapeng Zhang, 2016

8._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 5

Dapeng Zhang, 2016

9._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 4

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

10._JA_6_/2_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 4

Dapeng Zhang, 2016

Population Assignment:

View Data

Dapeng Zhang, 2016

11._JA_6_/2_[POU] GC-08-091-2-14

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

Mars, 2018

12._JA_6_/2_[POU] GC-08-091-2-14

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

Mars, 2018

13._JA_6_/2_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 15

Dapeng Zhang, 2016

14._JA_6_/2_[POU]

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8214 10

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25

SNP Profiles matching JA6/2 [POU]

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Input profile: JA_6_/2_[POU]

1._JA_6_/2_[POU]

97.4 % 39 shared markers

2._JA_6_/2_[POU]

97.4 % 39 shared markers

3._JA_6_/2_[POU]

97.4 % 39 shared markers

4._JA_6_/2_[POU]

97.4 % 39 shared markers

5._JA_6_/2_[POU]

97.4 % 39 shared markers

6._JA_6_/2_[POU]

97.4 % 39 shared markers

7._JA_6_/2_[POU]

97.4 % 39 shared markers

8._JA_6_/2_[POU]

97.4 % 39 shared markers

9._JA_6_/2_[POU]

97.4 % 39 shared markers

10._JA_6_/2_[POU]

97.4 % 39 shared markers

11._JA_6_/2_[POU] GC-08-091-2-14

97.4 % 39 shared markers

12._JA_6_/2_[POU] GC-08-091-2-14

97.4 % 39 shared markers

13._JA_6_/2_[POU]

97.4 % 38 shared markers

14._JA_6_/2_[POU]

97.4 % 38 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
39 shared markers

97.4 %
38 shared markers

97.4 %
38 shared markers